Posts by Ben Johnson

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Mosquito survey identifies reservoir of disease

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Mosquito borne viruses are a major cause of mortality and morbidity, especially in the developing world. As warmer weather increases the habitat for these disease vectors the problem is spreading to the developed world. A five-year study published today in Virology Journal shows for the first time the extent of mosquito-borne viruses (known as arboviruses) in diverse regions of Kenya.

The researchers surveyed almost half a million mosquitoes from varied habitats including savannah grassland, semi-arid Acacia thorn bushes, and mangrove swamps, and sequenced the genomes of the viruses they found. 83 different viruses were found, both known and unknown species that cause disease in humans and livestock. Predominant virus families were alphaviruses, flaviviruses and orthobunyaviruses; …

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A novel coronavirus capable of causing fatal disease

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In September 2012 a patient in Saudi Arabia died of acute respiratory illness and kidney failure due to an unknown infectious agent. A novel species of coronavirus was later identified and shown to be the cause of this and eleven subsequent cases, which were spread across the Middle East and the UK. A timely review, published today in Virology Journal, summarises the outbreak and timeline of events so far.

The most common initial symptoms were reported to be fever, cough and shortness of breath, which developed to severe pneumonia and in some cases renal failure. Interestingly, all other known human coronaviruses cause mild respiratory disease and contribute to the common cold, with the exception of the SARS coronavirus, which …

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New journal Cancer & Metabolism launches today

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New journal Cancer & Metabolism launches today with a selection of articles that highlight the altered metabolic pathways that drive cancer. Altered glucose metabolism of tumor cells was first noted by Otto Warburg in the 1920s, for which he won the Nobel Prize. In later years, the discovery of oncogenes and tumor suppressor genes transformed our understanding of cancer, but left metabolism neglected. Now recent advances show that many oncogenes drive cancer by altering metabolic pathways, leading to an explosion of research. It is also clear that metabolic diseases, such as diabetes and obesity, are linked to cancer in ways that are not entirely clear.

The launch issue of Cancer & Metabolism includes pioneering research that for the first …

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Synthetic “poop” as a treatment for C. Difficile published in new journal Microbiome

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A new treatment for superbug Clostridium difficile is published today in the launch issue of Microbiome. Canadian researchers have developed a “super-probiotic”, a synthetic stool called the RePOOPulate, as an alternative to stool transplantation. The RePOOPulate is composed of 33 different bacterial strains isolated from the stool of a healthy 41 year old female at the University of Guelph. The bacteria were purified on agar plates, identified by rRNA sequencing and then pooled together in fixed ratios to form the RePOOPulate.

A pilot study was conducted at Kingston General Hospital, Canada, where the RePOOPulate probiotic was inoculated into two female patients in their 70s, both of whom had severe C. difficile infection and had not responded …

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New Editors for Virology Journal

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Professor Linfa Wang has joined Virology Journal as Editor-in-Chief. Professor Wang is a leading researcher in emerging infections, including the discovery of novel, potentially zoonotic, viruses in bats. He is joined by ten new Section Editors and over eighty Associate Editors who together cover all aspects of virology, including the viruses of animals, plants and microbes. A full list of the journal’s Section and Associate Editors can be found here.

Research from Professor Wang has significantly advanced our understanding of the role of bats as a key reservoir of human pathogens. His lab played a leading role in identifying bats as the natural host of the Severe Acute Respiratory Syndrome (SARS) virus. He has …

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New animal model to study chronic hepatitis B virus infection

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Research published today in Virology Journal describes a new model to study chronic hepatitis B virus (HBV) infection, which could be used to determine risk factors and test treatments for the disease. HBV is estimated to infect one third of the world’s population at some point in their lives, leading to cirrhosis of the liver and in some cases liver cancer. The virus usually causes an acute, self-limiting, infection but it can also persist in the liver leading to chronic hepatitis and a greatly increased risk of hepatocellular carcinoma (HCC). With over 240 million people chronically infected worldwide, this makes HBV a major cause of cancer. Although there is a successful vaccine, there is currently …

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Convergent evolution in eukaryotic viruses

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Research published today in Virology Journal shows the remarkable evolutionary history of an important group of viruses. The Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) comprise at least six families of viruses that infect a broad variety of eukaryotic hosts. Poxviridae, Asfarviridae, Iridoviridae, Ascoviridae, Phycodnaviridae, and Mimiviridae are all thought to have evolved from one ancestral virus many millions of years ago, before diverging into distinct families. This group of viruses ranges from the causative agent of smallpox (Poxviridae) to the largest viruses ever observed and that infect amoeba (Mimiviridae)!

Natalya Yutin and Eugene Koonin undertook a comprehensive genome comparison that revealed a set of approximately fifty conserved, core genes that …

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Microbiome announcements – a new article type from Microbiome

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New journal Microbiome now accepts short reports of metagenomic datasets and their associated clinical or environmental data, such as those recently used for the NIH-funded Human Microbiome Project (HMP).

Microbiome, which is open for submissions, reflects the growing importance of the need to study microorganisms and their function in their natural environment, their microbiome, whether that environment is the human body, an environmental niche or any other habitat. “Microorganisms, by their omnipresence, impact the entire biosphere, including the human body.” explains co-Editor-in-Chief Jacques Ravel, who is studying the effect of the human microbiome on women’s health. Dr Ravel was an author on two recent publications in Nature that comprehensively mapped the human microbiome on 18 sites in the …

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Perioperative Medicine launches with new guidelines on fluid management during high-risk surgery

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Perioperative Medicine launches today with important guidelines for fluid management during surgery. The consensus statement was agreed by the Clinical Leaders of the English Enhanced Recovery Partnership, set up by the UK Department of Health to improve recovery after major surgery.

The statement provides important evidence-based guidelines for fluid management in high-risk patients, including the training of all anaesthetists in the use of cardiac output measuring technologies. These technologies, such as the Oesophageal Doppler, are rarely used in high risk NHS patients, despite clear evidence that inadequate fluid management increases mortality after surgery by up to three-fold (the recent NCEPOD report found that arterial lines, central lines and cardiac output monitoring were only used in 27%, 14% and …

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